Valley Oak Genome 0.5

This assembly has been aggressively haplotype reduced, resulting in very few genome regions represented more than once, but also approximately 100 Mb missing entirely. Due to high heterozygosity, typical assembly methods fail to collapse haplotypes for as much as half of the genome. We’ve found this version of the genome to be particularly useful as a reference genome for variant calling.
Data links for this study:
–Valley Oak Genome 0.5 (reduced) FASTA file download
-Valley Oak Genome 0.5 subset annotation gff file download
-SNPs at Dryad