The Valley Oak Genome Project is an over-arching research program centered on an NSF-funded partnership between UCLA and Johns Hopkins University to produce a high quality annotated assembly of tree #786 of Quercus lobata, a widespread California endemic oak species (NSF grant #1444611). Related to this project are several collaborative studies including: first draft genome sequence, reference transcriptome, epigenetic studies, and a provenance study. On this site, the public will be able to access the databases used in these studies and descriptions of the related projects. We hope that this research provides valuable genomic resources to the oak research community and valuable information useful to the management of tree populations.
Valley oak, Quercus lobata, is considered a keystone species that shapes the ecosystem and its biodiversity where it is found. Valley oaks are important to California’s diverse Native American communities and their cultures, including influencing historic trade routes, and location of settlements. The sustainability of California oak ecosystems relies on how oaks will tolerate a changing climate, which is the central motivation for this project.
-Dendrome: A Forest Tree Genome Database
-PineRefSeq: Pine Reference Sequences
-Phytozome: The Plant Genomics Resource